Seminar: RNA in Focus – From Extraction and Quantification to Protein Expression
Bohunice Campus
Masaryk University in Brno
Department of Biochemistry
Kamenice 5
Building C05, 1st floor
Lecture Room 114
Institute of Molecular Genetics of the Czech Academy of Sciences
Vídeňská 1083
142 20 Prague 4
Lecture Room, Ground Floor (Main Building)
Seminar: RNA in Focus – From Extraction and Quantification to Protein Expression
Pro českou verzi, KLIKNĚTE ZDE.
The seminar will provide a comprehensive overview of RNA workflows and their integration with protein level gene expression analysis.
The first part will focus on the key steps in RNA analysis, including RNA extraction, the benefits of automation, quality control, and reverse transcription. Greater emphasis will be placed on qPCR and the fundamentals of qPCR data analysis.
The second part will address the relationship between mRNA abundance and final protein levels. Because gene expression is regulated at multiple post-transcriptional, translational, and post-translational levels, elevated transcript abundance does not necessarily result in increased protein expression. In this context, HiBiT technology will be introduced as a sensitive tool for monitoring total cellular protein levels, protein stability, and protein degradation. HiBiT application in RNA therapeutics will also be discussed, particularly for evaluating the impact of mRNA modifications on subsequent translation.
The seminar will further cover RNA interference (RNAi) as both a regulatory mechanism of gene expression and a valuable tool in the development of RNA based therapeutics. The mechanism of RNAi action will be presented together with siRNA pooling strategies aimed at improving silencing efficiency while minimizing off target effects.
Finally, we will show how the effects of RNA therapeutics can be assessed using cell based assays focused on proliferation, viability, and apoptosis.
Timeline
10:00-10:45 – RNA Analysis From the Scratch – Extraction, Protection, Reverse Transcription (Kerem Yildirim)
10:45-11:00 – Coffee Break and Q&A
11:00-11:20 – Navigating qPCR: Experimental Design, Data Analysis, and Best Practices (Kerem Yildirim)
11:20-12:00 – From mRNA to Protein; HiBiT Technology for Translation and Protein Level Monitoring; RNA Interference; Assessing RNA Therapy Effects on Cells (Lukáš Išler)
12:00-12:15 - Final Thoughts and Discussion
Speakers
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Mgr. Lukáš Išler (East Port) Lukáš Išler is an Application Specialist at our company, focusing on identifying optimal solutions for laboratories in the field of molecular and cellular biology while providing expert support to customers. In addition to on-site visits, you may also meet him at seminars and “mini seminars,” where he presents as the main speaker. |
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Dr. Kerem Yildirim (Promega) Dr. Kerem Yıldırım provides scientific expertise and supports the implementation of Promega’s innovative solutions and technologies, tailored to the specific goals of each customer’s research. His mission is to empower scientists with the right tools and resources to accelerate their discoveries and achieve impactful outcomes. |
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